Introduction
Methods
Oncomine analysis
Comprehensive correlation analysis in tumour-infiltrating immune cells
Analysis based on the OnCoLnc Database
Gene expression profiling interactive analysis
Kaplan–Meier (K–M) survival curve analysis
TISIDB database analysis
Human protein atlas database analysis
Coexpression gene prediction and GSEA
Results
Expression level of EZH2 across cancers
Prognostic potential value of EZH2 across cancers
Cancer | Cox | P-value | FDR | Rank | Median | Mean |
---|---|---|---|---|---|---|
BLCA | 0.032 | 7.00e-01 | 8.58e-01 | 13,285 | 475.71 | 599.61 |
BRCA | 0.082 | 3.50e-01 | 7.03e-01 | 8182 | 395.74 | 504.19 |
CESC | − 0.327 | 1.60e-02 | 2.05e-01 | 1239 | 1033.8 | 1118.51 |
COAD | − 0.147 | 1.50e-01 | 5.58e-01 | 4290 | 657.07 | 697.51 |
ESCA | 0.001 | 9.90e-01 | 9.95e-01 | 16,624 | 482.73 | 573.25 |
GBM | − 0.037 | 6.90e-01 | 9.58e-01 | 12,003 | 598.43 | 689.2 |
HNSC | − 0.158 | 2.40e-02 | 2.46e-01 | 1590 | 479.81 | 577.87 |
KIRC | 0.292 | 2.30e-04 | 1.62e-03 | 2346 | 126.98 | 149.04 |
KIRP | 0.527 | 7.90e-04 | 8.76e-03 | 1477 | 123.29 | 140.76 |
LAML | − 0.028 | 8.20e-01 | 9.43e-01 | 13,200 | 1041.46 | 1043.88 |
LGG | 0.277 | 6.20e-03 | 1.62e-02 | 6414 | 216.22 | 286.97 |
LIHC | 0.478 | 2.80e-06 | 1.23e-03 | 36 | 248.55 | 306.71 |
LUAD | 0.097 | 1.80e-01 | 4.10e-01 | 7248 | 320.93 | 397.7 |
LUSC | − 0.088 | 1.90e-01 | 7.01e-01 | 4467 | 629.89 | 713.28 |
OV | − 0.003 | 9.70e-01 | 9.93e-01 | 16,448 | 503.56 | 601.14 |
PAAD | 0.228 | 4.10e-02 | 1.63e-01 | 4299 | 207.07 | 238.52 |
READ | − 0.188 | 3.80e-01 | 9.57e-01 | 6463 | 643.34 | 675.6 |
SARC | 0.133 | 2.00e-01 | 4.83e-01 | 6586 | 440.14 | 578.62 |
SKCM | 0.052 | 4.40e-01 | 6.36e-01 | 11,030 | 447.42 | 528.58 |
STAD | − 0.169 | 5.30e-02 | 3.49e-01 | 2548 | 483.32 | 521.53 |
UCEC | 0.121 | 3.00e-01 | 9.88e-01 | 4955 | 460.41 | 528.01 |
Relationship between EZH2 expression and Immune Infiltration
Association of EZH2 expression with immune markers
Immune cell | Gene markers | None | Purity | ||
---|---|---|---|---|---|
Cor | P-value | Cor | P-value | ||
CD8 + T cell | CD8A | 0.180 | ** | 0.286 | *** |
CD8B | 0.160 | * | 0.272 | *** | |
T cell | CD6 | 0.161 | * | 0.305 | *** |
CD3D | 0.235 | *** | 0.350 | *** | |
CD3E | 0.161 | * | 0.214 | *** | |
SH2D1A | 0.147 | * | 0.265 | *** | |
TRAT1 | 0.141 | * | 0.267 | *** | |
CD3G | 0.226 | *** | 0.324 | *** | |
CD2 | 0.182 | ** | 0.323 | *** | |
B cell | CD19 | 0.244 | *** | 0.318 | *** |
FCRL2 | 0.173 | ** | 0.303 | *** | |
KIAA0125 | 0.118 | 0.023 | 0.226 | *** | |
TNFRSF17 | 0.130 | 0.012 | 0.264 | *** | |
SPIB | 0.373 | *** | 0.464 | *** | |
PNOC | 0.166 | * | 0.279 | *** | |
CD79A | 0.131 | 0.012 | 0.245 | *** | |
Monocyte | CD86 | 0.294 | *** | 0.449 | *** |
CD115(CSF1R) | 0.153 | * | 0.296 | *** | |
TAM | CD68 | 0.210 | *** | 0.301 | *** |
IL10 | 0.220 | *** | 0.335 | *** | |
M1 macrophage | IRF5 | 0.482 | *** | 0.487 | *** |
COX2(PTGS2) | 0.088 | 0.092 | 0.212 | *** | |
M2 macrophage | CD163 | 0.101 | 0.052 | 0.218 | *** |
MS4A4A | 0.102 | 0.051 | 0.231 | *** | |
Neutrophils | FPR1 | 0.218 | *** | 0.35 | *** |
SIGLEC5 | 0.271 | *** | 0.402 | *** | |
CSF3R | 0.285 | *** | 0.428 | *** | |
FCGR3B | 0.175 | ** | 0.206 | ** | |
CEACAM3 | 0.16 | 0.041 | 0.186 | ** | |
CD116(ITGAM) | 0.289 | *** | 0.387 | *** | |
Dendritic cell | CCL13 | 0.137 | * | 0.196 | ** |
CD209 | 0.127 | 0.014 | 0.212 | *** | |
HSD11B1 | 0.332 | *** | − 0.336 | *** | |
HLA-DPB1 | 0.154 | * | 0.271 | *** | |
HLA-DQB1 | 0.146 | * | 0.256 | *** | |
HLA-DRA | 0.167 | * | 0.287 | *** | |
HLA-DPA1 | 0.158 | * | 0.283 | *** | |
BCDA-1(CD1C) | 0.114 | 0.029 | 0.207 | ** | |
BDCA-4(NRP1) | 0.263 | *** | 0.291 | *** | |
CD11c(ITGAX) | 0.348 | *** | 0.484 | *** | |
Natural killer cell | XCL2 | 0.17 | ** | 0.258 | *** |
KIR2DL1 | 0.039 | 0.455 | 0.018 | 0.742 | |
KIR2DL3 | 0.168 | * | 0.205 | ** | |
KIR2DL4 | 0.211 | *** | 0.241 | *** | |
Mast cell | TPSB2 | − 0.037 | 0.479 | 0.001 | 0.986 |
HDC | − 0.149 | * | − 0.121 | 0.025 | |
Th1 | IFN-γ(IFNG) | 0.249 | *** | 0.333 | *** |
TNF-α(TNF) | 0.282 | *** | 0.414 | *** | |
STAT4 | 0.238 | *** | 0.303 | *** | |
STAT1 | 0.387 | *** | 0.246 | *** | |
Th2 | GATA3 | 0.172 | ** | 0.309 | *** |
STAT6 | 0.193 | ** | 0.179 | ** | |
STAT5A | 0.329 | *** | 0.389 | *** | |
Tfh | BCL6 | 0.201 | *** | 0.205 | ** |
IL21 | 0.147 | * | 0.188 | ** | |
Th17 | STAT3 | 0.168 | * | 0.209 | *** |
IL17A | 0.072 | 0.168 | 0.075 | 0.164 | |
Effector T cell | CX3CR1 | 0.187 | ** | 0.242 | *** |
FGFBP2 | − 0.085 | 0.103 | − 0.07 | 0.195 | |
FCGR3A | 0.295 | *** | 0.383 | *** | |
Effector memory T cell | PD-1 (PDCD1) | 0.295 | *** | 0.391 | *** |
DUSP4 | 0.256 | *** | 0.363 | *** | |
Central memory T cell | CCR7 | 0.083 | 0.111 | 0.219 | *** |
SELL | 0.196 | ** | 0.308 | *** | |
IL7R | 0.093 | 0.073 | 0.201 | ** | |
Resident memory T cell | CD69 | 0.109 | 0.035 | 0.222 | *** |
ITGAE | 0.279 | *** | 0.280 | *** | |
CXCR6 | 0.156 | * | 0.288 | *** | |
MYADM | 0.354 | *** | 0.388 | *** | |
Exhausted T cell | TIM-3 (HAVCR2) | 0.310 | *** | 0.472 | *** |
TIGIT | 0.262 | *** | 0.385 | *** | |
LAG3 | 0.287 | *** | 0.332 | *** | |
CXCL13 | 0.264 | *** | 0.342 | *** | |
LAYN | 0.185 | ** | 0.257 | *** | |
Resting treg T cell | FOXP3 | 0.191 | ** | 0.262 | *** |
IL2RA | 0.252 | *** | 0.377 | *** | |
Effector treg T cell | CTLA4 | 0.296 | *** | 0.404 | *** |
CCR8 | 0.383 | *** | 0.479 | *** |
Immune cell | Gene markers | Tumor | Tumor-sum | Normal | Normal-sum | ||||
---|---|---|---|---|---|---|---|---|---|
Cor | P-value | Cor | P-value | Cor | P-value | Cor | P-value | ||
CD8 + T cell | CD8A | 0.2 | *** | 0.18 | ** | 0.71 | *** | 0.69 | *** |
CD8B | 0.15 | *** | 0.62 | *** | |||||
T cell | CD6 | 0.029 | 0.11 | 0.17 | * | 0.49 | ** | 0.71 | *** |
CD3D | 0.23 | *** | 0.65 | *** | |||||
CD3E | 0.13 | 0.01 | 0.59 | *** | |||||
SH2D1A | 0.13 | 0.011 | 0.68 | *** | |||||
TRAT1 | 0.034 | 0.51 | 0.65 | *** | |||||
CD3G | 0.24 | *** | 0.63 | *** | |||||
CD2 | 0.15 | * | 0.52 | ** | |||||
B cell | CD19 | 0.11 | 0.03 | 0.21 | *** | 0.39 | * | 0.36 | *** |
FCRL2 | 0.076 | 0.14 | 0.57 | *** | |||||
KIAA0125 | 0.15 | * | 0.53 | *** | |||||
TNFRSF17 | 0.094 | 0.071 | 0.6 | *** | |||||
SPIB | 0.14 | * | 0.43 | * | |||||
PNOC | 0.1 | 0.047 | 0.59 | *** | |||||
CD79A | 0.083 | 0.11 | 0.51 | ** | |||||
Monocyte | CD86 | 0.32 | *** | 0.27 | *** | 0.55 | *** | 0.55 | *** |
CD115(CSF1R) | 0.22 | *** | 0.49 | ** | |||||
TAM | CD68 | 0.23 | *** | 0.26 | *** | 0.53 | *** | 0.57 | *** |
IL10 | 0.21 | *** | 0.43 | * | |||||
M1 Macrophage | IRF5 | 0.44 | *** | 0.37 | *** | 0.44 | * | 0.44 | * |
COX2(PTGS2) | 0.035 | 0.5 | 0.27 | 0.055 | |||||
M2 Macrophage | CD163 | 0.16 | * | 0.12 | 0.017 | 0.38 | * | 0.47 | ** |
MS4A4A | 0.16 | * | 0.48 | ** | |||||
Neutrophils | FPR1 | 0.24 | *** | 0.35 | *** | 0.31 | 0.028 | 0.49 | ** |
SIGLEC5 | 0.27 | *** | 0.17 | 0.24 | |||||
CSF3R | 0.21 | *** | 0.5 | ** | |||||
FCGR3B | 0.03 | 0.56 | 0.32 | 0.021 | |||||
CEACAM3 | 0.15 | * | 0.25 | 0.078 | |||||
CD116(ITGAM) | 0.34 | *** | 0.69 | *** | |||||
Natural killer cell | XCL2 | 0.049 | 0.35 | 0.15 | * | 0.67 | *** | 0.6 | *** |
KIR2DL1 | 0.11 | 0.038 | 0.62 | *** | |||||
KIR2DL3 | 0.21 | *** | 0.22 | 0.12 | |||||
KIR2DL4 | 0.2 | *** | 0.32 | 0.025 | |||||
Dendritic cell | CCL13 | 0.065 | 0.22 | 0.068 | 0.19 | 0.41 | * | 0.64 | *** |
CD209 | 0.16 | * | 0.44 | * | |||||
HSD11B1 | − 0.22 | *** | 0.094 | 0.51 | |||||
HLA-DPB1 | 0.22 | *** | 0.58 | *** | |||||
HLA-DQB1 | 0.088 | 0.09 | 0.52 | *** | |||||
HLA-DRA | 0.22 | *** | 0.59 | *** | |||||
HLA-DPA1 | 0.2 | ** | 0.54 | *** | |||||
BCDA-1(CD1C) | 0.17 | ** | 0.63 | *** | |||||
BDCA-4(NRP1) | 0.28 | *** | 0.41 | * | |||||
CD11c(ITGAX) | 0.25 | *** | 0.5 | *** | |||||
Mast cell | TPSB2 | − 0.042 | 0.42 | 0.031 | 0.56 | 0.096 | 0.51 | − 0.097 | 0.5 |
HDC | − 0.059 | 0.26 | − 0.083 | 0.57 | |||||
Th1 | IFN-γ(IFNG) | 0.21 | *** | 0.29 | *** | 0.65 | *** | 0.84 | *** |
TNF-α(TNF) | 0.11 | .031 | 0.33 | 0.02 | |||||
STAT4 | 0.081 | 0.12 | 0.61 | *** | |||||
STAT1 | 0.21 | *** | 0.8 | *** | |||||
Th2 | GATA3 | 0.18 | ** | 0.29 | *** | 0.19 | 0.19 | 0.62 | *** |
STAT6 | 0.18 | ** | 0.57 | *** | |||||
STAT5A | 0.22 | *** | 0.69 | *** | |||||
Tfh | BCL6 | 0.1 | 0.054 | 0.17 | ** | 0.011 | 0.94 | 0.11 | 0.46 |
IL21 | 0.12 | 0.023 | 0.31 | 0.031 | |||||
Th17 | STAT3 | 0.29 | *** | 0.26 | *** | 0.11 | 0.44 | 0.2 | 0.16 |
IL17A | 0.0028 | 0.96 | 0.25 | 0.085 | |||||
Effector T cell | CX3CR1 | 0.14 | * | 0.27 | *** | 0.22 | 0.13 | 0.45 | * |
FGFBP2 | − 0.098 | 0.06 | 0.074 | 0.61 | |||||
FCGR3A | 0.29 | *** | 0.5 | *** | |||||
Effector memory T cell | PD-1 (PDCD1) | 0.22 | *** | 0.39 | *** | 0.73 | *** | 0.72 | *** |
DUSP4 | 0.29 | *** | 0.54 | *** | |||||
Central memory T cell | CCR7 | 0.064 | 0.22 | 0.12 | 0.023 | 0.58 | *** | 0.68 | *** |
SELL | 0.12 | 0.024 | 0.54 | *** | |||||
IL7R | 0.029 | 0.58 | 0.56 | *** | |||||
Resident memory T cell | CD69 | 0.039 | 0.46 | 0.28 | *** | 0.63 | *** | 0.64 | *** |
ITGAE | 0.23 | *** | 0.092 | 0.52 | |||||
CXCR6 | 0.14 | * | 0.44 | * | |||||
MYADM | 0.29 | *** | 0.24 | 0.1 | |||||
Exhausted T cell | TIM-3(HAVCR2) | 0.13 | 0.014 | 0.3 | *** | 0.53 | *** | 0.65 | *** |
PD-1 (PDCD1) | 0.22 | *** | 0.73 | *** | |||||
TIGIT | 0.22 | *** | 0.61 | *** | |||||
LAG3 | 0.2 | ** | 0.48 | ** | |||||
CXCL13 | 0.097 | 0.064 | 0.31 | 0.028 | |||||
LAYN | 0.087 | 0.095 | 0.52 | *** | |||||
Resting treg T cell | FOXP3 | − 0.002 | 0.96 | 0.15 | * | 0.42 | * | 0.6 | *** |
IL2RA | 0.19 | ** | 0.37 | * | |||||
Effector treg T cell | CTLA4 | 0.23 | *** | 0.25 | *** | 0.65 | *** | 0.68 | *** |
CCR8 | 0.21 | *** | 0.51 | ** | |||||
TNFRSF9 | 0.015 | 0.77 | 0.65 | *** |